/includes # Make an includes folder outside webroot
/includes/class # Add a class folder for the main controllers
/includes/function # Functions folder
/includes/interface # Interface folder to operate the modules
/includes/core # core folder
/includes/core/config # conf folder
/includes/core/libs # holds third party apps
/includes/core/libs/smarty # not so smart in my mind.
/includes/core/libs/phpmailer
/includes/core/libs/pear
/includes/core/class # holds our core classes ( database , uploader, file, text, blah blah blah )
/includes/core/smarty_plugins #external folder for dropping plugins ( dont mess with thirdparty apps )
/templates # holds main templates, not modules
/templates/templates_c # cacahchachachchachchachcahachcahachach
/modules # mod folder
/modules/skeleton
/modules/skeleton/includes
/modules/skeleton/includes/class
/modules/skeleton/templates/
/modules/skeleton/templates_c/